用于鼻咽癌筛查的方法和装置的制造方法_5

文档序号:9893193阅读:来源:国知局
反应),达到验收 标准,23.00 < Ct (VICH 28.00(表12)。阈值Ct (VIC) >28.00,可指示PCR受抑制。频率:为试 验的每份样品内源性。
[0290] 定量方法对照(RNA酶):定量方法对照用于验证所述方法正确进行。人DNA是该过 程的所有分析前和分析阶段期间存在的方法。DNA分离期间将总DNA标准化为lOng/μΙ浓度 并且试验50ng( = 5μ1 X lOng/μΙ)。测定起始模板原则上由人DNA(>99.995 % )组成并且通过 比较与人RNA酶P基因的检测相关的原始、实时PCR输出值Ct (VIC)估计回收率,达到验收标 准,23.00<(:^1〇<28.00(表12)。落在预期参考范围内的阈值(:^1〇验证了所述方法。 频率:为试验的每份样品内源性。
[0291] 无模板对照_(外部水空白):设计方法空白或无模板对照(NTC)以检查样品处理和 PCR分析从头到尾的污染。在PCR设置期间除分子级无菌水代替DNA模板外,使用与试样相同 的样品试剂制备、送样和PCR程序引入无模板对照。如果无反应性,则接受NTC结果,表11。频 率:外源性,每张96孔反应板两个。
[0292] 测定标准化-公认参考标准(ARS):使用市场上可买到的爱波斯坦-巴尔病毒B95.8 定量病毒DNA对照,产品目录号08-926-000(Advanced Biotechnologies,Inc .MD 21046), 为该项测定建立公认参考标准(ARS) (Ct真值)。
[0293] 表10.该项测定的公认参考标准
[0294]
[0295]
[0296]
[0297]
[0298] 板特异性对照:实时PCR运行的验收:
[0299] 在接受实时PCR运行之前必须满足两个标准。EBV DNA对照用作定量外部对照以验 证反应试剂盒仪器系统如同预期那样作用。3份9.25fg EBV DNA重复样品和3份92.50fg EBV DNA重复样品与临床样品并行运行。如果定量外部对照的每个Ct值都在表11提供的上 下限内,则接受实时PCR运行。一个或两个对照的失败可表明引物或探针降解、对照降解、技 术人员出错、系统问题或污染。
[0300] 由分子级水代替模板组成的两个无模板对照(NTC)在PCR设置期间未向反应引入 污染性靶核酸。如果NTCCt结果表明未反应,则接受实时PCR运行,表11。
[0301] 表11.板特异性对照
[0302]
[0303] 样品特异性对照:单项试验结果的验收:试样中的显性DNA分离物是人DNA(> 99.995%)。每个人类基因组呈单拷贝存在的人RNA酶P基因的PCR检测和扩增用作定量内部 对照。RNA酶P基因是从样本采集到最终PCR存在的方法并且用于证实单项试验结果。临床研 究确定在50ng人DNA试验质量中RNA酶P靶序列的Ct真值对应于Ct (VIC) = 25.50 ± 2.50,并 且如果定量内部对照的Ct(VIC)值在这些预期界限内,则接受单项试验结果。
[0304] 越高的Ct值可指示反应受抑制或失败、DNA提取阶段的误差、荧光测量和标准化误 差、移液误差、受损试剂或系统问题。越低的Ct(VIC)值可指示荧光测量和标准化误差、移液 误差、受损试剂或系统问题。
[0305]试验患者样品,一式两份。可由移液误差或经过热循环仪加热块的差示热分布或 其它可指定过程或设备误差引起重复试验之间大的变化。可通过监测重复试验之间的差异 限制来自这些误差的影响。基于临床研究,重复试验之间的最大容许差异:ACt(FAM)〈3和 ACt(VIC)<3〇
[0306] 表12.样品特异性对照
[0307]
[0308] 期望值:试验患者样品,一式两份并且报告附属Ct(FAM)结果。如表13所示,31.50〈 Ct (FAM)< 40.00或EDL〈1.7的测定结果指示EV相关的NPC的低可能性。28.00 < Ct (FAM)< 31.50或EDL 2 1.7和EDL < 2.6的测定结果在指示患者可能处于高于正常的发展NPC的风险 的不明确结果中。Ct(FAM)〈28.00或EDL>2.6的测定结果指示EBV相关的NPC的高可能性。 [0309] 表13.分析结果的临床意义(Ct(FAM)和EDL)
[0310]
[0311]
[0312] 灵敏度和特异性:在表14中呈现了对于该项测定在截止值Ct = 31.50时,对应于临 床诊断的临床表现。具有'初始'假阳性结果(FP)的患者的'最终'临床状态;3名患者(3/10) 最终在临床上呈现(对于NPC而言),6名患者(6/10)复检时为阴性并且因此恢复正常(TN)并 且1名患者(1/10)复检时保持其假阳性状态,无 NPC的临床证据。
[0313] 表14.在截止值Ct = 31.50时的初始和最终测定表现;在截止值Ct = 31.50时的初 始和最终测定表现。TP =真阳性,FN=假阴性,TN=真阴性,FP =假阳性
[0314]
[0315]
[0316] ^15
[0317]用于NP筛查的换算表[EDL = Log(EBV拷贝数)]
[0318]
[0319] 表16.序列表
[0320] SEQ ID NO: 1GTC TCC CCT TTG GAA TG-37
[0321] SEQ ID ^:2:57-AAT AAC AGA CAA TGG ACT CCC TTA GC-37
[0322] SEQ ID NO:3:
[0323] GTCGTCTCCCCTTTGGAATGGCCCCTGGACCCGGCCCACAACCTGGCCCGCTAAGGAGTCCATTGTCTGTTATT
[0324] SEQ ID ^:4:57-CCT GGA CCC GGC CCA CAA CC-37
[0325] 参考文献
[0326] l.Ung A,Chen CJ?Levine PH,et al.Familial and sporadi c cases of nasopharyngeal carcinoma in Taiwan.Anticancer Res 1999;19:661-665.
[0327] 2.Pathmanathan R?Prasad U?Sadler R?Flynn K?Raab~Traub N.Clonal proliferations of cells infected with Epstein-Barr virus in preinvasive lesions related to nasopharyngeal carcinoma.N Engl J Med 1995;333:693-698.
[0328] 3 . Skinner Dff ? Van HC.Nasopharyngeal carcinoma:methods of presentation.Ear Nose Throat J 1990;69:237-240.
[0329] 4.Ho S,Teo P,Kwan WH,Choi P,Tjong J,Johnson PJ.Staging and IgA VCA titre in patients with nasopharyngeal carcinoma:changes over a 12-year period.Oral Oncol1998;34:491-495.
[0330] 5. Liu MT,Yeh CY. Prognostic value of anti-Epstein-Barr virus antibodies in nasopharyngeal carcinoma(NPC).Radiat Med 1998;16:113-117.
[0331] 6.Zeng Y,Pi GH,Deng H,et al.Epstein-Barr virus seroepidemiology in China.AIDS Res 1986;2Suppll:S7-15.
[0332] 7.Feinmesser R,Miyazaki I?Cheung R,Freeman JL,Noyek AM,Dosch H_ M.Diagnosis of nasopharyngeal carcinoma by DNA amplification of tissue obtained by fine-needle aspiration.N Engl J Med 1992;326:17-21.
[0333] 8.Tune CE,Liavaag PG?Freeman JL,et al.Nasopharyngeal brush biopsies and detection of nasopharyngeal cancer in a high-risk population.J Natl Cancer Inst 1999;91:796-80.
[0334] 9. Shi MM. Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies.Clin Chem 2001;47: 164-172.
[0335] lO.Hardin JA,Sherr DH,DeMaria M,Lopez PA.A simple fluorescence method for surface antigen phenotyping of lymphocytes undergoing DNA fragmentation.J Immunol Methods 1992;154:99-107.
[0336] ll.Zweig MH?Campbell G.Receiver-operating characteristic(ROC)plots:a fundamental evaluation tool in clinical medicine.Clin Chem 1993;39:561-577.
[0337] 12.Low WK?Leong JL?Goh YH?Fong Kff.Diagnostic value of Epstein-Barr viral serology in nasopharyngeal carcinoma.Otolaryngol Head Neck Surg 2000; 123:505-507.
[0338] 13.Low WK?Leong JL.Correlating clinical appearance of nasopharyngeal carcinoma with tumor staging.J Roy Coll Surg Edinb 2000;45:146-148.
[0339] 14.Sham JST?ffei WI?Kwan WH?Chan Cff?Choi PHK?Choy D.Fiberoptic endoscopic examination and biopsy in determining the extent of nasopharyngeal carcinoma.Cancer 1989;64:1838-1842.
[0340] 15.Raab-Traub N,Flynn K,Pearson G,Huang A,Levine P,Lanier A,Pagano J.The differentiated form of nasopharyngeal carcinoma contains Epstein-Barr virus DNA.Int J Cancer.1987Jan 15;39(1):25-9.
[0341] 16.Wei WI?Sham JS.Nasopharyngeal Carcinoma.Lancet.2005;365:2041-2054.
[0342] 17.Ferlay J,Shin HR,Bray F,et al.Estimates of worldwide burden of cancer in 2008:GL0B0CAN 2008.Int J Cancer.2010;127(12):2893-2917.
[0343] 18.Jia WH?Huang QH,Liao J,et al.Trends in incidence and mortality of nasopharyngeal carcinoma over a 2〇-25year period(1978/1983-2002)in Sihui and Cangwu counties in southern China.BMC Cancer.2006;6:178
[0344] 19.Cao SM?Simons MJ?Qian CN.The prevalence and prevention of nasopharyngeal carcinoma in China.Chin J Cancer.2011;30(2):114-119.
[0345] 20.Lo YMD,Chan LY,Chan AT,et al.Quantitative and temporal correlation between circulating cell-free Epstein-Barr virus DNA and tumor recurrence in nasopharyngeal carcinoma. Cancer Res.1999a;59:5452-5455.
[0346] 21.Lo YMD?Chan LYS?Lo Kff?et al.Quantitative analysis of cell-free Epstein-Barr virus DNA in plasma of patients with nasopharyngeal carcinoma.Cancer Res.1999b;59:1188-1199.
[0347] 22.Lo YMD,Leung S?Chan LY,et al.Kinetics of plasma Epstein-Barr virus DNA during radiation therapy for nasopharyngeal carcinoma.Cancer Res.2000;60: 2351-2355.
[0348] 23.Tune CE,Liavaag PG,Freeman JL,et al.Nasopharyngeal brush biopsies and detection of nasopharyngeal cancer in a high-risk population.J Natl Cancer Inst.1999;91:796-880.
[0349] 24.Teresa M.?Yu G?Hu K.?Li J.Plasma Epstein-Barr Virus Immunoglobulin A and DNA for nasopharyngeal carcinoma screening in the United States.Otolaryngology-Head and Neck Surgery.2007;136:992-997.
[0350] 25.Tsang RK?Vlantis AC?Ho Rff?Tam JS?To KF?Van Hasselt CA.Sensitivity and specificity of Epstein-Barr virus IGA titer in the diagnosis of nasopharyngeal carcinoma:a three-year institutional review.Head Neck.2004;26 (7):598-602.
[0351] 26.Cheng 丽,Chan KH,Chen HL,Luo RX,Ng SP,Luk W,Zheng BJ,Ji MF,Liang JS,Sham JST,Wang DK,Zong YS?Ng MH.Assessing the risk of nasopharyngeal carcinoma on the basis of EBV antibody spectrum.Int J Cancer.2002;97(4):489-492.
[0352] 27. Stevens SJ,Verkuijlen SA,Hariwiyanto B,Harijadi,Fachiroh J, Paramita DK,et al.Diagnostic value of measuring Epstein-Barr virus(EBV)DNA load and carcinoma-specific viral mRNA in relation to anti-EBV immunoglobulin A(IgA)and IgG antibody levels in blood of nasopharyngeal carcinoma patients from Indonesia.J Clin Microbiol.2005;43:3066-3073.
[0353] 28·Le QT,Jones CD,Yau TK,Shirazi HA,Wong PH,Thomas EN,et al· A Comparison study of different PCR assays in measuring circulating Plasma Epstein-Barr virus
当前第5页1 2 3 4 5 6 
网友询问留言 已有0条留言
  • 还没有人留言评论。精彩留言会获得点赞!
1